課程資訊
課程名稱
化學資訊
Cheminformatics 
開課學期
107-1 
授課對象
電機資訊學院  資訊工程學研究所  
授課教師
曾宇鳳 
課號
CSIE5730 
課程識別碼
922EU3500 
班次
 
學分
3.0 
全/半年
半年 
必/選修
選修 
上課時間
星期四6,7,8(13:20~16:20) 
上課地點
 
備註
本課程以英語授課。上課教室:資519。
總人數上限:50人 
Ceiba 課程網頁
http://ceiba.ntu.edu.tw/1071CSIE5730_ 
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課程概述

The new discipline of cheminformatics covers the application of computer-
assisted methods to chemical problems such as information storage and
retrieval, the prediction of physical, chemical or biological properties of
compounds, spectra simulation, structure elucidation, reaction modeling,
synthesis planning and drug design. This class provides an introduction to the
representation of molecular structures and reactions, data types and
databases/data sources, search methods, methods for data analysis as well as
such applications as structure elucidation, reaction simulation, synthesis
planning and drug design.



 

課程目標
* Basic chemistry for cheminformatics, representation of the chemical
structure, chemical nomenclature, elements, and formulas of compounds to
chemical structure fingerprints
* Chemical data, from 2D to 3D structure, structure comparison
* Chemical reactions,
* Calculation of physical chemical properties of compounds,
* Calculation of structure descriptors
* Methods for data analysis, and applications in computer-aided drug design,
spectra analysis, molecular modeling, simulation  
課程要求
Basic chemistry and physics background preferred but not required. Experience
in machine learning, multivariate statistical analysis, and pattern
recognition will be helpful but not required.
 
預期每週課後學習時數
 
Office Hours
 
指定閱讀
Textbook: Cheminformatics, by Johann Gasteiger, Thomas Engel

Publisher: John Wiley & Sons (December 9, 2003) , ISBN-10: 3527306811 
參考書目
Handbook of Chemoinformatics
Johann Gasteiger, WILEY-VCH, 3527306803 
評量方式
(僅供參考)
 
No.
項目
百分比
說明
1. 
Attendance 
10% 
 
2. 
Second Midterm Exam 
30% 
 
3. 
First Midterm Exam 
30% 
 
4. 
Final Projects 
30% 
 
 
課程進度
週次
日期
單元主題
第1週
09/13  Introduction 
第2週
09/20  Representation of Chemical Compounds and Graph theory I 
第3週
09/27  Representation of Chemical Compounds and Graph theory II 
第4週
10/04  Database and Data Source I 
第5週
10/11  2D Descriptors and 3D Descriptors Calculation 
第6週
10/18  Program Demos 
第7週
10/25  First Midterm Exam 
第8週
11/01  Chemical Similarity and Diversity 
第9週
11/08  Database and Data Source II 
第10週
11/15  No Class (School Anniversary Celebrations) 
第11週
11/22  Final Projects Proposal I 
第12週
11/29  QSAR I 
第13週
12/06  QSAR II 
第14週
12/13  Second Midterm Exam 
第15週
12/20  Methods for Data Analysis/ Molecular modeling case studies I 
第16週
12/27  Final Projects Proposal II 
第17週
2019/01/03  Final Projects discussion/ Molecular Modeling Case Studies II 
第18週
2019/01/10  Final Projects